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| Id : | 106 |
| Type : | BUG |
| Reporter : | ze |
| Assignee : | |
| Priority : | BLOCKER |
| Creation Date : | 13 Jun 07 02:42 |
| Last Update Date : | 14 Jun 07 01:43 |
| Resolution : | Fixed |
Bootstrap error
# Importing Group "Authors" at node /documentation/doc/authors Problem during import() Caused by : Error in createGroup : Error in bind : A resource is already binded with this URI /documentation/doc/authors
IMPORT, createProfile = true
Wed Jun 13 10:11:00 CDT 2007 : /users/root : : kernel.create
Wed Jun 13 10:11:00 CDT 2007 : /users/root : : kernel.resetAcls
Wed Jun 13 10:11:00 CDT 2007 : /users/root : : kernel.resetAcls
Wed Jun 13 10:11:01 CDT 2007 : /users/root : : kernel.setProperty
Wed Jun 13 10:11:01 CDT 2007 : /users/root : /ServerConfig : kernel.create
Wed Jun 13 10:11:01 CDT 2007 : /users/root : /ServerConfig : kernel.resetAcls
Wed Jun 13 10:11:01 CDT 2007 : /users/root : /ServerConfig : kernel.resetAcls
Wed Jun 13 10:11:01 CDT 2007 : /users/root : /ServerConfig : kernel.setProperty
Wed Jun 13 10:11:01 CDT 2007 : /users/root : /documentation : kernel.create
Wed Jun 13 10:11:01 CDT 2007 : /users/root : /documentation : kernel.resetAcls
Wed Jun 13 10:11:01 CDT 2007 : /users/root : /documentation : kernel.resetAcls
Wed Jun 13 10:11:01 CDT 2007 : /users/root : /documentation : kernel.setProperty
Wed Jun 13 10:11:01 CDT 2007 : /users/root : /documentation : kernel.bind
Wed Jun 13 10:11:01 CDT 2007 : /users/root : /documentation : libresourceWiki.page.create
Wed Jun 13 10:11:01 CDT 2007 : /users/root : /documentation : libresourceWiki.page.editContent
org.libresource.LibresourceException: Can't remove a document
at org.libresource.search.LibresourceSearch.remove(LibresourceSearch.java:128)
at org.libresource.search.LibresourceSearch.reindex(LibresourceSearch.java:134)
at org.libresource.kernel.ejb.IndexationEventListenerBean.onMessage(IndexationEventListenerBean.java:94)
at sun.reflect.GeneratedMethodAccessor103.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.objectweb.jonas_ejb.container.JMessageEndpointProxy.invoke(JMessageEndpointProxy.java:214)
at $Proxy0.onMessage(Unknown Source)
at org.objectweb.joram.client.connector.InboundSession.onMessage(InboundSession.java:172)
at org.objectweb.joram.client.jms.MessageConsumerListener.activateListener(MessageConsumerListener.java:449)
at org.objectweb.joram.client.jms.MultiSessionConsumer.onMessage(MultiSessionConsumer.java:168)
at org.objectweb.joram.client.jms.Session.onMessage(Session.java:1835)
at org.objectweb.joram.client.jms.Session.run(Session.java:878)
at org.objectweb.joram.client.connector.InboundSession.run(InboundSession.java:157)
at org.objectweb.jonas_lib.JWorkManager.doMyWork(JWorkManager.java:386)
at org.objectweb.jonas_lib.JWorkManager.nextWork(JWorkManager.java:443)
at org.objectweb.jonas_lib.JWorkManager$WorkThread.run(JWorkManager.java:536)
Caused by: java.io.FileNotFoundException: /home/richard_y/LibreSource/tmp-work/index/segments (No such file or directory)
at java.io.RandomAccessFile.open(Native Method)
at java.io.RandomAccessFile.<init>(Unknown Source)
at org.apache.lucene.store.FSInputStream$Descriptor.<init>(FSDirectory.java:376)
at org.apache.lucene.store.FSInputStream.<init>(FSDirectory.java:405)
at org.apache.lucene.store.FSDirectory.openFile(FSDirectory.java:268)
at org.apache.lucene.index.SegmentInfos.read(SegmentInfos.java:40)
at org.apache.lucene.index.IndexReader$1.doBody(IndexReader.java:116)
at org.apache.lucene.store.Lock$With.run(Lock.java:109)
at org.apache.lucene.index.IndexReader.open(IndexReader.java:111)
at org.apache.lucene.index.IndexReader.open(IndexReader.java:106)
at org.libresource.search.LibresourceSearch.remove(LibresourceSearch.java:121)
… 16 more
Wed Jun 13 10:11:01 CDT 2007 : /users/root : /documentation/doc : kernel.create
Wed Jun 13 10:11:01 CDT 2007 : /users/root : /documentation/doc : kernel.resetAcls
Wed Jun 13 10:11:01 CDT 2007 : /users/root : /documentation/doc : kernel.resetAcls
Wed Jun 13 10:11:01 CDT 2007 : /users/root : /documentation/doc : kernel.setProperty
Wed Jun 13 10:11:01 CDT 2007 : /users/root : /documentation/doc : kernel.bind
Wed Jun 13 10:11:01 CDT 2007 : /users/root : /documentation/doc : libresourceWiki.page.create
Wed Jun 13 10:11:01 CDT 2007 : /users/root : /documentation/doc : libresourceWiki.page.editContent
org.libresource.LibresourceException: Can't remove a document
at org.libresource.search.LibresourceSearch.remove(LibresourceSearch.java:128)
at org.libresource.search.LibresourceSearch.reindex(LibresourceSearch.java:134)
at org.libresource.kernel.ejb.IndexationEventListenerBean.onMessage(IndexationEventListenerBean.java:94)
at sun.reflect.GeneratedMethodAccessor103.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.objectweb.jonas_ejb.container.JMessageEndpointProxy.invoke(JMessageEndpointProxy.java:214)
at $Proxy0.onMessage(Unknown Source)
at org.objectweb.joram.client.connector.InboundSession.onMessage(InboundSession.java:172)
at org.objectweb.joram.client.jms.MessageConsumerListener.activateListener(MessageConsumerListener.java:449)
at org.objectweb.joram.client.jms.MultiSessionConsumer.onMessage(MultiSessionConsumer.java:168)
at org.objectweb.joram.client.jms.Session.onMessage(Session.java:1835)
at org.objectweb.joram.client.jms.Session.run(Session.java:878)
at org.objectweb.joram.client.connector.InboundSession.run(InboundSession.java:157)
at org.objectweb.jonas_lib.JWorkManager.doMyWork(JWorkManager.java:386)
at org.objectweb.jonas_lib.JWorkManager.nextWork(JWorkManager.java:443)
at org.objectweb.jonas_lib.JWorkManager$WorkThread.run(JWorkManager.java:536)
Caused by: java.io.FileNotFoundException: /home/richard_y/LibreSource/tmp-work/index/segments (No such file or directory)
at java.io.RandomAccessFile.open(Native Method)
at java.io.RandomAccessFile.<init>(Unknown Source)
at org.apache.lucene.store.FSInputStream$Descriptor.<init>(FSDirectory.java:376)
at org.apache.lucene.store.FSInputStream.<init>(FSDirectory.java:405)
at org.apache.lucene.store.FSDirectory.openFile(FSDirectory.java:268)
at org.apache.lucene.index.SegmentInfos.read(SegmentInfos.java:40)
at org.apache.lucene.index.IndexReader$1.doBody(IndexReader.java:116)
at org.apache.lucene.store.Lock$With.run(Lock.java:109)
at org.apache.lucene.index.IndexReader.open(IndexReader.java:111)
at org.apache.lucene.index.IndexReader.open(IndexReader.java:106)
at org.libresource.search.LibresourceSearch.remove(LibresourceSearch.java:121)
… 16 more
Wed Jun 13 10:11:01 CDT 2007 : /users/root : /documentation/doc : libresourceWiki.page.edit
org.libresource.LibresourceException: Can't remove a document
at org.libresource.search.LibresourceSearch.remove(LibresourceSearch.java:128)
at org.libresource.search.LibresourceSearch.reindex(LibresourceSearch.java:134)
at org.libresource.kernel.ejb.IndexationEventListenerBean.onMessage(IndexationEventListenerBean.java:94)
at sun.reflect.GeneratedMethodAccessor103.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.objectweb.jonas_ejb.container.JMessageEndpointProxy.invoke(JMessageEndpointProxy.java:214)
at $Proxy0.onMessage(Unknown Source)
at org.objectweb.joram.client.connector.InboundSession.onMessage(InboundSession.java:172)
at org.objectweb.joram.client.jms.MessageConsumerListener.activateListener(MessageConsumerListener.java:449)
at org.objectweb.joram.client.jms.MultiSessionConsumer.onMessage(MultiSessionConsumer.java:168)
at org.objectweb.joram.client.jms.Session.onMessage(Session.java:1835)
at org.objectweb.joram.client.jms.Session.run(Session.java:878)
at org.objectweb.joram.client.connector.InboundSession.run(InboundSession.java:157)
at org.objectweb.jonas_lib.JWorkManager.doMyWork(JWorkManager.java:386)
at org.objectweb.jonas_lib.JWorkManager.nextWork(JWorkManager.java:443)
at org.objectweb.jonas_lib.JWorkManager$WorkThread.run(JWorkManager.java:536)
Caused by: java.io.FileNotFoundException: /home/richard_y/LibreSource/tmp-work/index/segments (No such file or directory)
at java.io.RandomAccessFile.open(Native Method)
at java.io.RandomAccessFile.<init>(Unknown Source)
at org.apache.lucene.store.FSInputStream$Descriptor.<init>(FSDirectory.java:376)
at org.apache.lucene.store.FSInputStream.<init>(FSDirectory.java:405)
at org.apache.lucene.store.FSDirectory.openFile(FSDirectory.java:268)
at org.apache.lucene.index.SegmentInfos.read(SegmentInfos.java:40)
at org.apache.lucene.index.IndexReader$1.doBody(IndexReader.java:116)
at org.apache.lucene.store.Lock$With.run(Lock.java:109)
at org.apache.lucene.index.IndexReader.open(IndexReader.java:111)
at org.apache.lucene.index.IndexReader.open(IndexReader.java:106)
at org.libresource.search.LibresourceSearch.remove(LibresourceSearch.java:121)
… 16 more
2007-06-13 10:11:01,810 : JManagedConnection.prepareStatement : reuse an open pstmt
2007-06-13 10:11:01,812 : JManagedConnection.prepareStatement : reuse an open pstmt
2007-06-13 10:11:01,814 : JManagedConnection.prepareStatement : reuse an open pstmt
Wed Jun 13 10:11:01 CDT 2007 : /users/root : /documentation/doc/authors : kernel.create
Wed Jun 13 10:11:01 CDT 2007 : /users/root : /documentation/doc/authors : kernel.resetAcls
Wed Jun 13 10:11:01 CDT 2007 : /users/root : /documentation/doc/authors : kernel.resetAcls11 comment(s)
comment by Sebastien Jourdain - 14 Jun 07 01:43 PM
Ok good news,if you need the jabber notification, since you reset the database you will need to execute an sql script and create a specific user on libresource for the jabber notification.
Let me know, if you want more information about it.Seb
comment by ze - 14 Jun 07 01:31 PM
No driver problem, I think I have try a second time bootstrap step without re-init database and this cause the binding error.For history I have used the java 1.6 from backports.org and I have set java alternative via update-alternatives --set java /usr/lib/jvm/java-6-sun/jre/bin/javaSo installation is now OK :)thanks
comment by Sebastien Jourdain - 14 Jun 07 11:46 AM
A document part that is present in the source package but maybe not in the installeur part.Thanks for your feed back,so finally the first problem came from the driver and the second from the postgres user limitation ?
1) LibreSource config file - create a directory for the LibreSource indexation (kernel.indexationDataDir) - create a directory for the LibreSource file exchange (libresource.distributedFilesystem) - give to the postgres group the right to use these folders sudo chgrp postgres tmp/files tmp/index sudo chmod g+rwx tmp/files tmp/index - create the libresource database in PostgreSQL - create the libresource user in PostgreSQL - allow this user to be a superuser : ALTER USER libresource WITH superuser; - Edit the file $LIBRESOURCE_HOME/Distribution/ls-config.properties in order to set your server properties - Edit the file $LIBRESOURCE_HOME/Distribution/build.properties in order to choose the service you want - Export the JONAS_ROOT path (The following given path should be updated regarding your personnal configuration) on windows: SET JONAS_ROOT=c:/JONAS_4_7_x on linux : export JONAS_ROOT=/opt/JONAS_4_7_x - Run "./ThirdPart/ant/bin/ant clean-all; ./ThirdPart/ant/bin/ant deploy" to build the LibreSource ear and libresourceDS.properties and libresourceMail.properties and libresourceConfig.properties
comment by ze - 14 Jun 07 11:33 AM
When try shutdown, drop, create, register root, login and bootstrap I hasSo the problem is that libresource need a postgres account with super-user priviliege...You can close the bug and add this need in install document :)Regards,
Importing defaultBootstrap.xml (5804314 o.) at (you are ls://v-vserveur2.uhb.fr:9000/users/root) * NOTICE : The user "ls://v-vserveur2.uhb.fr:9000/users/guest" already exists… * NOTICE : The user "ls://v-vserveur2.uhb.fr:9000/users/guest" already exists… * NOTICE : The user "ls://v-vserveur2.uhb.fr:9000/users/guest" already exists… * Importing Page "Documentation" at node /documentation * Importing Page "LibreSource Documentation" at node /documentation/doc * Importing Group "Authors" at node /documentation/doc/authors * Importing Repository "Figures" at node /documentation/doc/images * Importing File "authentification-fig1.png" at node /documentation/doc/images/authentification-fig1 Problem during import() Caused by : Error in createFile : ERREUR: doit être super-utilisateur pour utiliser lo_import() du côté serveur
comment by Sebastien Jourdain - 14 Jun 07 10:31 AM
Ok then,
- Remove the postgresql driver in the INSTALL_DIR/JONAS_4_7_6/lib/ext/postgresql.jar
- Put this one instead http://jdbc.postgresql.org/download/postgresql-8.1-409.jdbc2ee.jar
- drop database
- create database
- start jonas again
- follow the installation procedure...
comment by ze - 14 Jun 07 10:22 AM
installed from libresource installer
comment by ze - 14 Jun 07 10:21 AM
I use Postgres 8.1 (from etch packages)
comment by ze - 14 Jun 07 10:21 AM
The web output:
Importing defaultBootstrap.xml (5804314 o.) at (you are ls://v-vserveur2.xxxx.fr:9000/users/root)
- NOTICE : The user "ls://v-vserveur2.uhb.fr:9000/users/guest" already exists...
- NOTICE : The user "ls://v-vserveur2.uhb.fr:9000/users/guest" already exists...
- NOTICE : The user "ls://v-vserveur2.uhb.fr:9000/users/guest" already exists...
- Importing Page "Documentation" at node /documentation
- Importing Page "LibreSource Documentation" at node /documentation/doc
- Importing Group "Authors" at node /documentation/doc/authors
comment by Sebastien Jourdain - 13 Jun 07 03:20 PM
What is your database version ?We needed to change the postgres driver for our installation. (http://jdbc.postgresql.org/download.html) in the JDBC 2 EE column.
comment by Sebastien Jourdain - 13 Jun 07 03:17 PM
The indexation error during bootstrap are normal since the indexation database is build after bootstrap.Could you add the importation web output in a comment ?
comment by Sebastien Jourdain - 13 Jun 07 03:08 PM
We are currently running on Debian etch with JDK 1.6, without any error.
So the problem don't come from your system.
Post a comment : - Moreover, did you installed libresource from
- the installer
- used the ear directly in jonas
- from the source ?
- Did you used the default bootstrap ?
- Did you retreived an old one ?
- shutdown jonas
- drop libresource database
- create libresource database
- start jonas
- go on libresource page and follow the procedure
- create root user
- bootstrap
Wiki Syntax
Simple text filters
| Mnemonic | Rendering | Comment |
|---|---|---|
| 1 Title | a style 1 heading (major heading) | |
| 1.1 Title | a style 1.1 heading (minor heading) | |
| - text | a list item (with -), several lines create a single list | |
| * text | a list item (with *) | |
| 1. text | an enumerated list | |
| __bold__ | bold | simple bold text |
| ~~italics~~ | italics | simple italic text |
| --strike-- | strike through text | |
| (empty line) | produces a new paragraph | |
| \\ | creates a line break, please use sparingly! | |
| [/documentation] or [../documentation] or [/documentation|Doc] | Like a standard link | internal link to another document |
| http://www.libresource.org/ | http://www.libresource.org/ | creates a link to an external resource, special characters that come after the URL and are not part of it must be separated with a space. |
| \X | X | escape special character X (i.e. {) |
| ---- | creates a horizontal rule |
Macros List
Macro syntaxe: {macroName:key1=param1|key2=param2|...}| Macro | Description | Parameters |
|---|---|---|
| api | Generates links to Java or Ruby API documentation. | 1: class name, e.g. java.lang.Object or java.lang.Object@Java131 2: mode, e.g. Java12, Ruby, defaults to Java (optional) |
| asin | Generates links to DVD/CD dealers or comparison services. Configuration is read from conf/asinservices.txt | 1: asin number |
| blink | Blink a text. | the text |
| bookmarks | Display the user bookmarks. | none |
| box | Create a box in order to change the basic disposition. | 1. the box title (optional) 2. the floating behaviour (left or right) (optional) 3. the height of the box (px,%) (optional) 4. the width of the box (px,%) (optional) |
| children | Display the current children list. | 1. uri= ...(optional) where you list the resources, the default uri is the current 2. groupby=… (optional) to group resources.The following value are available : type or owner or uri or creation or update or name 3. sort=… (optional) to sort resources. The values available are : type or owner or uri or creation or update or name 4. creation=...(optional) allows you to filter on the creation date. The values available are: Date (dd/MM/yyyy) or '+'/'-'/'!' followed by a Date(dd/MM/yyyy): allows to keep superior/inferior/exclude date 5. update=...(optional) allows you to filter on the modification date. The values available are: Date (dd/MM/yyyy) or '+'/'-'/'!' followed by a Date(dd/MM/yyyy): allows to keep superior/inferior/exclude date 6. type=...(optional) :allows you to filter resources with its type. The values available are : Project, Template, Timeline, Page, Repository, File, Forum, Thread, Message, Group, Synchronizer, BugTracker, Issue, Site, Survey, Form, DropBox 7. owner=...(optional):allows you to show only resources belonging to one user or many users. 8. limit=...(optional): allows you to limit the displayed resources 9. depth=...(optional): allows you to fix the depth of listed ressources 10. view=...(optional): to fix the view of displayed resources. The view available are : flat (default view) or count(to display the number of listed ressources) or tree(display resource following tree viewer) |
| code | Displays a chunk of code with syntax highlighting, for example Java, XML and SQL. The none type will do nothing and is useful for unknown code types. | 1: syntax highlighter to use, defaults to java (optional) |
| hello | Say hello example macro. | 1: name to print |
| html | By pass wiki engine to allow HTML code in content | the html block |
| api-docs | Displays a list of known online API documentations and mappings. | none |
| file-path | Displays a file system path. The file path should use slashes. Defaults to windows. | 1: file path |
| image | Display an image. | 1. the image URI 2. align (right ,left or center) (optional) 3. width (optional) 4. height (optional) |
| inter-wiki | Displays a list of known InterWiki mappings. | none |
| isbn | Generates links to book dealers or comparison services. Configuration is read from conf/bookservices.txt. | 1: isbn number |
| link | Generate a weblink. | unexplained, lazy programmer, probably |
| list-of-macros | Displays a list of available macros. | unexplained, lazy programmer, probably |
| loginBox | Display a login box. | none |
| mailto | Displays an email address. | 1: mail address |
| menu | Include the menu of the specified URI | 1. The uri for the menu to be include |
| news | Display a message thread as news. | 1. the thread URI 2. Max (optional) |
| pre | Allow rigid text style. (Keep text formating) | none |
| printField | Display a node forms fields values. | 1. (uri=) The uri on which you want to get the form value (Optional, by default=.) 2. (print=) Print or not the field label and the field value (Optional, by default=label, value, edit) 3. (field=) Print or not the specified field (Optional, by default will print all) |
| quote | Display quotations. | 1: source (optional) 2: displayed description, default is Source (optional) |
| quoteMessage | Quote a message in another message by referencing only the message URI. | 1. The message URI to quote. |
| resource | Include the view of a LibreSource resource. | 1. the uri of the resource (mandatory) 2. the view (optional) 3. the action (optional) 4. noaction (optional) |
| rfc | Generates links to RFCs. | unexplained, lazy programmer, probably |
| rss | Include an RSS feed. | 1. the url of the rss feed (mandatory) |
| searchBox | Display a search box. | 1. the URI pattern |
| subProjects | Display the current subProjects list. | none |
| summary | Create the summary of a wiki page. | 1. the page URI (optional) |
| survey | Display results of a survey. | the survey URI |
| table | Displays a table. | none |
| tableForm | Display a table listing form results. | 1. (uri=) The uri on which you want to get the form value (Optional, by default use the local path) 2. (print=) Print additinal features such as a link to the data (goLink) or a link to get a CSV file (csvExport) (Optional, by default print all) 3. (field=) The list of field to show (Optional by default all) |
| timeline | Display the first items of a timeline. | 1. the timeline URI 2. Max items (optional) |
| user | Generate a link to the current user page, according 'action'. | 1. the action (optional) 2. the link label (optional) |
| workspaces | Display the user workspaces. | none |
| xref | Generates links to Java Xref source code. | 1: class name, e.g. java.lang.Object or java.lang.Object@Nanning 2: line number (optional) |
Smiley
 |  |  |  |  |  |  |  |  |  |  |  |  |   |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| :-) | :-( | ;-) | :-P | :-D | :-[ | :-/ | :-* | >:o | 8-) | :-$ | :-! | :'( | :-X =-O |